The Integrated Microbial Genomes(IMG) is a genome browsing and annotation system developed by the DOE-Joint Genome Institute. IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI integrated with other publicly available genomes (including Archaea, Bacteria, Eukarya, Viruses and Plasmids). IMG provides a set of tools for comparative analysis of genes, genomes and functions. The Joint Genome Institute Production Genomics Facility is located in Walnut Creek, California. ...
Users can employee a set of powerful tools for comparative analysis and explore the microbial genomes along its 3 main dimensions (genomes, genes and functions), select them and transfer them in the comparative analysis carts.
Users can also type or upload their own gene annotations (called MyIMG gene annotations) and the IMG system will allow them to generate Genbank or EMBL format files containing these annotations. The GenBank sequence database is an annotated collection of all publicly available nucleotide sequences and their protein translations. ... The European Molecular Biology Laboratory (EMBL) is a molecular biology research institution supported by 17 European countries. ...
For a tutorial on on how to use the system visit OpenHelix
The Integrated Microbial Genomes with Microbiome Samples (IMG/M) system is an extension of the IMG system providing a comparative analysis context of metagenomic data with the publicly available isolate genomes. Metagenomics (also Environmental Genomics, Ecogenomics or Community Genomics) is the study of genomes recovered from environmental samples as opposed to from clonal cultures. ...
Categories: Genome projects | Bioinformatics | Bioinformatics databases Genomics is the study of an organisms entire genome. ... Genome projects are scientific endeavours that ultimately aim to determine the complete genome sequence of an organism (be it an animal, a plant, a fungus, a bacterium, an archaean, a protist or a virus). ... // Overview Polyploid (in Greek: ÏÎ¿Î»Î»Î±ÏÎ»ÏÎ½ - multiple) cells or organisms contain more than two copies (ploidy) of their chromosomes. ... Glycomics, or glycobiology is a discipline of biology that deals with the structure and function of oligosaccharides (chains of sugars). ... // The Human Genome Project (HGP) is a project to de-code (i. ... This article or section is in need of attention from an expert on the subject. ... Chemogenomics can be defined as a genomic response to chemical compounds. ... Structural genomics or structural bioinformatics refers to the analysis of macromolecular structure particularly proteins. ... The terms pharmacogenomics and pharmacogenetics tend to be used interchangeably, and a precise, consensus definition of either remains elusive. ... Pharmacogenomics is the branch of pharmaceutics which deals with the influence of genetic variation on drug response in patients by correlating gene expression or single-nucleotide polymorphisms with a drugs efficacy or toxicity. ... Toxicogenomics is a form of analysis by which the activity of a particular toxin or chemical substance on living tissue can be identified based upon a profiling of its known effects on genetic material. ... Map of the human X chromosome (from the NCBI website). ... Cheminformatics (also known as chemoinformatics and chemical informatics) is the use of computer and informational techniques, applied to a range of problems in the field of chemistry. ... Systems biology is a term used very widely in the biosciences, particularly from the year 2000 onwards, and in a variety of contexts. ...
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