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Encyclopedia > Archaebacteria


Archaea
Scientific classification
Kingdom: Archaea
Phyla / Classes

Phylum Crenarchaeota
Phylum Euryarchaeota
    Halobacteria
    Methanobacteria
    Methanococci
    Methanopyri
    Archaeoglobi
    Thermoplasmata
    Thermococci
Phylum Korarchaeota
Phylum Nanoarchaeota

The Archaea are a major group of prokaryotes. They were first identified in 1977 by Carl Woese and George Fox based on their separation from other prokaryotes on 16S rRNA phylogenetic trees. These two groups were originally named the Archaebacteria and Eubacteria, treated as kingdoms or subkingdoms. Woese argued that they represented fundamentally different branches of living things, and later renamed the groups Archaea and Bacteria to emphasize this.


Archaea are similar to other prokaryotes in most aspects of cell structure and metabolism. However, their transcription and translation - the two central process in molecular biology - do not show the typical bacterial features, but are extremely similar to those of eukaryotes. For instance, archaean translation uses eukaryotic initiation and elongation factors, and their transcription involves TATA_binding proteins and TFIIB as in eukaryotes.


Several other characteristics also set the Archaea apart. Unlike most bacteria, they have a single cell membrane that lacks a peptidoglycan wall. Further, both bacteria and eukaryotes have membranes composed mainly of glycerol-ester lipids, whereas archaea have membranes composed of glycerol-ether lipids. These differences may be an adaptation on the part of Archaea to hyperthermophily. Archaeans also have flagella that are notably different in composition and development from the superficially similar flagella of bacteria.

Enlarge
A phylogenetic tree based on rRNA data, showing the separation of bacteria, archaea, and eukaryotes.

Many archaeans are extremophiles. Some live at very high temperatures, often above 100C, as found in geysers and black smokers. Others are found in very cold habitats or in highly saline, acidic, or alkaline water. However, other archaeans are mesophiles, and have been found in environments like marshland, sewage, and soil. Many methanogenic archaea are found in the digestive tracts of animals such as ruminants, termites, and humans. Archaea are usually harmless to other organisms and none is known to cause disease.


Individual archaeans range from 0.1 to over 15 μm in diameter, and some form aggregates or filaments up to 200 μm in length. They occur in various shapes, such as spherical, rod_shaped, spiral, lobed, or rectangular. They also exhibit a variety of different types of metabolism. For instance the halobacteria can use light to produce ATP, although none conduct photosynthesis in the usual sense. Archaea are divided into two main groups based on rRNA trees, the Euryarchaeota and Crenarchaeota. Two other groups have been tentatively created for certain environmental samples and the peculiar species Nanoarchaeum equitum, but their affinities are uncertain.


Woese argued that the bacteria, archaea, and eukaryotes each represent a primary line of descent that diverged early on from an ancestral progenote with poorly developed genetic machinery. This hypothesis is reflected in the name Archaea, from the Greek archae or ancient. Later he treated these groups formally as domains, each comprising several kingdoms. This division has become very popular, although the idea of the progenote itself is not generally supported. Some biologists, however, have argued that the archaebacteria and eukaryotes arose from specialized eubacteria.


The relationship between archaeans and eukaryotes remains an important problem. Aside from the similarities noted above, many genetic trees group the two together, and in some the eukaryotes are placed closer to the Eurarchaeota than the Crenarchaeota are, although the membrane chemistry suggests otherwise. However, the discovery of archaean_like genes in certain bacteria, such as Thermotoga, makes their relationship difficult to determine. Some have suggested that eukaryotes arose through fusion of an archaean and eubacterium, which became the nucleus and cytoplasm, which accounts for various genetic similarities but runs into difficulties explaining cell structure.


External links

  • ArchaeaWeb - by UNSW - Information about Archaea (http://www.archaea.unsw.edu.au/)
  • Introduction to the Archaea, ecology, systematics and morphology (http://www.ucmp.berkeley.edu/archaea/archaea.html)
  • Extremophiles Bioprospecting for antimicrobials, Dr Sarah Maloney (http://www.mediscover.net/Extremophiles.cfm) Citat: "...Ground breaking reearch on extremophiles continues to this day, with the recently discovered 22nd genetically encoded amino acidpyrrolysine – from the archaeon, Methanosarcina barkeri, (Hao et al., 2002; Srinivasan et al., 2002)...."
  • BBC News July 21, 1999: Toughest bug reveals genetic secrets (http://news.bbc.co.uk/1/hi/sci/tech/399972.stm) Citat: "...It [Pyrococcus abyssi] likes conditions that the vast majority of other organisms would find impossible to live in. It thrives best at temperatures of about 103 degrees [Celsius] and under pressures of about 200 atmospheres...."
  • Pyrococcus abyssi Home page at Genoscope (http://www.genoscope.cns.fr/Pab/)

References

  • Howland, John L. The Surprising Archaea: Discovering Another Domain of Life Oxford: Oxford University Press. ISBN 0-19-511183-4
  • Lake, J.A. (1988). Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature 331 184–186.
  • Woese, Carl R.; Fox, George E. (1977). Phylogenetic Structure of the Prokaryotic Domain: The Primary Kingdoms. Proceedings of the National Academy of Sciences of the United States of America 74(11) 5088–5090.



  Results from FactBites:
 
Archaebacteria - Encyclopedia.com (1020 words)
Archaebacteria, diverse group of bacteria (prokaryotes), sometimes called the archaea and considered a major group unto themselves.
Archaebacteria are contrasted with the Eubacteria, from which they differ biochemically in the arrangement of the bases in their ribosomal RNA and in the composition of their plasma membranes and cell walls.
Archaebacteria emerged at least 3.5 billion years ago and live in environments that resemble conditions existing when the earth was young.
Archaea - MSN Encarta (428 words)
Before the discovery of archaebacteria, scientists divided all living organisms into prokaryotes (organisms without a cellular nucleus), which consisted primarily of bacteria, and eukaryotes (organisms with a cellular nucleus), which consisted of fungi, plants, and animals.
Archaebacteria were initially grouped with bacteria because like bacteria, they lack a well-defined nucleus.
The enzyme that archaebacteria use to fix nitrogen appears to be very ancient and may come from a life form that predates archaebacteria and true bacteria.
  More results at FactBites »

 
 

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